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The Biochemical Foundations of Life

  • Module code: LS4002
  • Year: 2018/9
  • Level: 4
  • Credits: 30
  • Pre-requisites: Appropriate Level 3 Science qualification
  • Co-requisites: None

Summary

This is a core module taken by students studying Biochemistry, Biological Sciences, Biomedical Science, Forensic Biology, Forensic Science, Medical Biochemistry, Nutrition and Pharmacology. The module is intended to give you an understanding of how basic chemical elements are bonded to form complex biomolecules in living systems. The module will then elaborate on the role that structure of proteins, carbohydrates and lipids plays in defining their properties and function along with describing some of the laboratory techniques used in their investigation. The module will also introduce the importance of energy transformations in living organisms. The module provides an essential introduction to level 5 and 6 modules that develop further knowledge in biochemical principles. Core material is delivered through lectures and problem solving workshops supported by laboratory practicals and subsequent data analysis.

Aims

  • To provide an understanding of how atoms bond to form molecules creating simple carbon structures which, through the addition of functional groups, form complex biomolecules.
  • To provide an understanding of how the structure of proteins, carbohydrates and lipids dictate their properties and function.
  • To provide an overview of the basic biochemical reactions and energy transformations within cells. 

Learning outcomes

On successful completion of the module, students will be able to:

  • demonstrate knowledge of atomic structure and bonding and how molecules interact with one another;
  • understand basic chemical reactions including making and breaking of bonds;
  • understand the conformations and stereochemistry of biomolecules;
  • describe, recognise and understand the structural properties and functions of proteins, including enzymes, carbohydrates and lipids;
  • display a knowledge of the basic metabolic pathways and their relationship to energy transformations;
  • demonstrate the key communication skill of report writing and develop laboratory and independent learning skills.

Curriculum content

  • Atoms and chemical bonding; structure of the atom, electronegativity, resonance effects, bonding within molecules (covalent) and between molecules (ionic, hydrogen, van der Waals).
  • Moles, concentrations and dilutions; molecular mass, the concept of a mole, calculating concentrations of solutions and dilutions.
  • Building blocks for biomolecules; structure of simple molecules, small carbon to large biomolecules, identification and naming of common functional groups.
  • Giving biomolecules shape; 3D biomolecular shapes and isomerism, configuration and conformations.
  • The aqueous environment; water, acids, bases, pH, pKa and buffers
  • Metabolism and energy transformations; basic biochemical reactions, metabolic pathways and energy transformations.
  • Introduction to the Biomolecules; Proteins and enzymes; amino acids, peptides and protein structure and function, enzyme kinetics (Km, Vmax, competitive and non-competitive inhibitors); Carbohydrates; mono-, di- and polysaccharides, structure and functions; Lipids; fatty acids, triacylglycerols, structural lipids
  • Introduction to Bioanalytical Science basic techniques including mass spectroscopy, separation techniques.
  • Laboratory skills; titrations, qualitative biochemical analysis, reaction rates, use of standard curves in quantitating unknown analytes.

Teaching and learning strategy

Lectures will be given to introduce and develop the major topics. Online and keynote lectures will deliver the basic chemical concepts and these will be supported by workshops designed to supplement and illustrate chemical topics. Keynote lectures will develop the major biological topics and guide students in the directed reading required to achieve the learning outcomes of the module. These will be recapped and reinforced during tutorial sessions.

The practical component is designed to provide students with the basic skills needed for the manipulation of organic compounds and to aid the development of "hands on" skills of students when dealing with biological materials. Laboratory sessions will also be used to support the theoretical material covered in lectures and to develop interpersonal skills by working in groups. Practical report writing will test written communication skills. Numerical problems of an applied biochemical nature, used within tutorial/workshop sessions will test/develop numeracy and problem solving skills. Students will develop self-awareness and independent learning skills through directed reading, assimilation of learning materials via Canvas.

Opportunities for students to develop generic skills that will enhance their employability include group work in practical classes, which will embed time management, teamwork and communication skills. Students will be expected to use feedback from staff to self-reflect on areas of strength and weakness and thus improve performance.

The module provides knowledge to underpin students understanding of more complex level 5 modules such as Proteins and Metabolism and also level 6 studies in Clinical Chemistry and Immunology.

Breakdown of Teaching and Learning Hours

Definitive UNISTATS Category Indicative Description Hours
Scheduled learning and teaching 44 one hour keynote lectures 12 one hour tutorials and workshops 4 practical sessions of 2-3 hours each 66
Guided independent study Directed reading, problem solving and data handling, online lectures and worksheets 234
Total (number of credits x 10) 300

Assessment strategy

Summative assessment is through an end of module examination, a MCQ-based mid-module test and a practical portfolio. The main exam will consist of short answer questions and MCQ, which will assess students understanding of the structure and function of macromolecules and the basics of enzyme kinetics, metabolism and energy generation and utilization. The mid module test will assess students' comprehension of the basic chemistry which underpins all other reactions in living organisms. The practical portfolio consists of two written practical assessments which will test students' ability to present and analyse data effectively and an MCQ test of questions based on all of the practicals undertaken to test students knowledge of the experimental and biochemical principles underpinning them. The production of summative practical portfolio will be guided by the provision of feed-forward from a formatively assessed report from the previous practical. Students are expected to apply generic study skills, numeracy, data presentation and analysis into their practical reports. Feed forward for the MCQ-based test on the practicals will be given in small group tutorials.

Mapping of Learning Outcomes to Assessment Strategy (Indicative)

Learning Outcome Assessment Strategy
1) Demonstrate knowledge of atomic structure and bonding and how molecules interact with one another. Mid-module MCQ Test (S)
2) Understand basic chemical reactions including making and breaking of bonds. Practical portfolio (F, S), Mid-module MCQ Test (S)
3) Understand the conformations and stereochemistry of molecules. Mid-module MCQ Test(S), End of year exam (S)
4) Describe, recognise and understand the structural properties and functions of the proteins, carbohydrates and lipids. End of year exam (S)
5) Display a knowledge of the basic metabolic pathways and their relationship to energy transformations End of year exam (S)
6) Demonstrate the key communication skill of report writing and develop laboratory and independent learning skills. Practical portfolio (F, S)

Elements of Assessment

Description of Assessment Definitive UNISTATS Categories Percentage
End of year exam Written exam 40%
Open book on line MCQ test Coursework 30%
Portfolio of practical assessments Coursework 30%
Total (to equal 100%) 100%

Achieving a pass

It IS NOT a requirement that any element of assessment is passed separately in order to achieve an overall pass for the module.

Bibliography core texts

The current editions of the following:

Crowe, J. and Bradshaw, T. Chemistry for the Biosciences, Oxford University Press

Nelson D L & Cox M M Lehninger Principles of Biochemistry, WH Freeman.

Bibliography recommended reading

Reed, R. Holmes, D. Weyers, J. and Jones, A. Practical Skills in Biomolecular Sciences, Longman

Useful Tips for Handling Quantitative Data in Biology. Life Sciences Study Package (Canvas resource)

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