Integrative multi-omics analysis identifies methylation-associated lncRNAs FAM83A-AS2 and AC012213.1 as candidate prognostic markers in lung adenocarcinoma
Al Sium, Syed Muktadir, Tonmoy, Mahafujul Islam Quadery, Barman, Dhirendra Nath, Nebel, Jean Christophe, Rahman, Farzana and Chowdhury, Sanjana Fatema, 2026, Bioinformatics Advances (6), 1, Published
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Quantifying domain-specific relevance of computational biology Wikipedia articles using TF-IDF and cosine similarity
Pradeep Menon, Arya, Davis, Trenton, Hegde, Megha, Näpflin, Nicolas C., Anjum, Audra, Barman, Sarah, DeBlasio, Dan, Eranti, Pradeep, Nebel, Jean Christophe, Sélem-Mojica, Nelly, Shome, Sayane, Welch, Lonnie R., Kilpatrick, Alastair M. and Rahman, Farzana, 2026, Bioinformatics (42), S1, Published
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Ten simple rules for writing a peer review
Rahman, Farzana and DeBlasio, Dan, 2026, PLoS Computational Biology (22), 6 pp e1014359, Published
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Steganography and probabilistic risk analysis: a game theoretical framework for quantifying adversary advantage and impact
Omego, Obinna, Rahman, Farzana and Nebel, Jean Christophe, 2026, PeerJ Computer Science (12), Published
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The 15th ISCB Student Wikipedia Competition: past, present and future perspectives
Kilpatrick, Alastair M, Anjum, Audra, DeBlasio, Dan, Eranti, Pradeep, Crespo, Aarón Gallego, Hegde, Megha, Karakulak, Tülay, Näpflin, Nicolas C, Sélem-Mojica, Nelly, Welch, Lonnie R and Rahman, Farzana, 2026, Bioinformatics Advances (6), 1, Published
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Reaping the fruits of LLM pruning: towards small language models for efficient non-coding variant effect prediction
Hegde, Megha, Nebel, Jean-Christophe and Rahman, Farzana, 2025, Genes (16), 11, Published
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Impact of the COVID-19 pandemic on computational biology early career researchers: a global retrospective study
Eranti, Pradeep, Hegde, Meg, Al Sium, Syed Muktadir, Parra, R. Gonzalo, Kilpatrick, Alastair M., Shome, Sayane and Rahman, Farzana, 2025, PLoS Computational Biology (21), 10, Published
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An educator framework for organizing Wikipedia editathons for computational biology
Sélem-Mojica, Nelly, Lubiana, Tiago, Pulido, Toni Hermoso, Gallego-Crespo, Aarón, Karakulak, Tülay, Hegde, Megha, Näpflin, Nicolas C, Anjum, Audra, Eranti, Pradeep, DeBlasio, Dan, García-Chávez, Jorge Noé, Rangel-Chávez, Cynthia Paola, Rodriguez-Gomez, Divanery, López-Ramírez, Varinia, Vázquez-Martínez, Juan, Welch, Lonnie R, Kilpatrick, Alastair M and Rahman, Farzana, 2025, Bioinformatics (41), Supplement_1 pp i12-i20, Published
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How AI is making affordable air pollution sensors more accurate
Nebel, Jean-Christophe and Rahman, Farzana, 2025, The Conversation, Published
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Air pollution monitoring using cost-effective devices enhanced by machine learning
Colléaux, Yanis, Willaume, Cédric, Mohandes, Bijan, Nebel, Jean Christophe and Rahman, Farzana, 2025, Sensors (25), 5, Published
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A deep learning framework for protein-to-metal binding prediction using protein language models
Shishir, Fairuz Shadmani, Sarker, Bishnu, Rahman, Farzana and Shomaji, Sumaiya, 2025, IEEE Transactions on Computational Biology and Bioinformatics (22), 6 pp 2575-2585, Published
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A new 13-lipoxygenase from Taxus media callus is functionally linked to paclitaxel biosynthesis
Hanano, Abdulsamie, Rahman, Farzana and Murphy, Denis, 2025, Scientific Reports (15), Published
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Language modelling techniques for analysing the impact of human genetic variation
Hegde, Megha, Nebel, Jean Christophe and Rahman, Farzana, 2025, Bioinformatics and Biology Insights (19), Published
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Closing the computational biology 'knowledge gap': Spanish Wikipedia as a case study
Sélem-Mojica, Nelly, Karakulak, Tülay, Anjum, Audra, Pashkov, Antón, Pérez-Estrada, Rafael, Enriquez-Guillén, Karina, DeBlasio, Dan, Ferreira-Gonzalez, Sofia, Medina-Rivera, Alejandra, Rodrigo-Torres, Daniel, Kilpatrick, Alastair M., Welch, Lonnie R. and Rahman, Farzana, 2024, Bioinformatics (40), S-1, Published
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Cleaning up the Big Smoke: forecasting London's air pollution levels using energy-efficient AI
Hegde, Megha, Nebel, Jean-Christophe and Rahman, Farzana, 2024, International Journal of Environmental Pollution and Remediation (12) pp 23-28, Published
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ISCB Student Council Symposium 2021, a virtual global venue: challenges and lessons learned
Rahman, Farzana, Parra, R. Gonzalo, Osorio-Mogollon, Cleidy, Grentzinger, Victor, Olguin-Orellana, Gabriel J., Ayala-Ruano, Sebastian, Gupta, Shruti, Eranti, Pradeep, Grover, Aayush, Cuypers, Bart, Fatima, Nazeefa and Shome, Sayane, 2023, F1000Research (12), Published
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Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia
Kilpatrick, Alastair M., Rahman, Farzana, Anjum, Audra, Shome, Sayane, Andalib, K. M.Salim, Banik, Shrabonti, Chowdhury, Sanjana F., Coombe, Peter, Astroz, Yesid Cuesta, Douglas, J. Maxwell, Eranti, Pradeep, Kiran, Aleyna D., Kumar, Sachendra, Lim, Hyeri, Lorenzi, Valentina, Lubiana, Tiago, Mahmud, Sakib, Puche, Rafael, Rybarczyk, Agnieszka, Al Sium, Syed Muktadir, Twesigomwe, David, Zok, Tomasz, Orengo, Christine A., Friedberg, Iddo, Kelso, Janet F. and Welch, Lonnie, 2022, Bioinformatics (38), S1, Published
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Population genetics and geometric morphometrics of the freshwater snail 'Segmentina nitida' reveal cryptic sympatric species of conservation value in Europe
Hobbs, Christopher S., Vega, Rodrigo, Rahman, Farzana, Horsburgh, Gavin J., Dawson, Deborah A. and Harvey, Christopher D., 2021, Conservation Genetics (22), 6 pp 855-871, Published
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Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi
Rahman, Farzana, Hassan, Mehedi, Hanano, Abdulsamie, Fitzpatrick, David A., McCarthy, Charley G.P. and Murphy, Denis J., 2018, BMC Genomics (19), Published
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Reflections on a journey: a retrospective of the ISCB Student Council Symposium series
Hassan, Mehedi, Namasivayam, Aishwarya Alex, DeBlasio, Dan, Fatima, Nazeefa, Siranosian, Benjamin, Parra, R. Gonzalo, Cuypers, Bart, Shome, Sayane, Monzon, Alexander Miguel, Fumey, Julien and Rahman, Farzana, 2018, BMC Bioinformatics (19), Suppl 12, Published
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Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae
Rahman, Farzana, Hassan, Mehedi, Rosli, Rozana, Almousally, Ibrahem, Hanano, Abdulsamie and Murphy, Denis J., 2018, PLoS ONE (13), 5, Published
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The ISCB Student Council Internship Program: expanding computational biology capacity worldwide
Anupama, Jigisha, Francescatto, Margherita, Rahman, Farzana, Fatima, Nazeefa, DeBlasio, Dan, Shanmugam, Avinash Kumar, Satagopam, Venkata, Santos, Alberto, Kolekar, Pandurang, Michaut, Magali and Guney, Emre, 2018, PLoS Computational Biology (14), 1, Published
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Specific caleosin/peroxygenase and lipoxygenase activities are tissue-differentially expressed in date palm ('Phoenix dactylifera' L.) seedlings and are further induced following exposure to the toxin 2,3,7,8-tetrachlorodibenzo-p-dioxin
Hanano, Abdulsamie, Almousally, Ibrahem, Shaban, Mouhnad, Rahman, Farzana, Hassan, Mehedi and Murphy, Denis J., 2017, Frontiers in Plant Science (7), Published
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ISCB-Student Council narratives: strategical development of the ISCB-Regional Student Groups in 2016
Shome, Sayane, Meysman, Pieter, Parra, R. Gonzalo, Monzon, Alexander Miguel, Palopoli, Nicolas, White, Benjamen, Rahman, Farzana, Hassan, Mehedi, Özkeserli, Zeynep, Ashano, Efejiro, Hughitt, V. Keith, Khan, Muhammad Uzair and Murphy, Denis J., 2016, F1000Research (5), Published
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Highlights from the ISCB Student Council Symposia in 2016
Jacobsen, Annika, Siranosian, Ben, Schwahn, Kevin, Conard, Ashley Mae, Aben, Nanne, Hassan, Mehedi, Fatima, Nazeefa, Hermans, Susanne M.A., Woghiren, Melissa, Meysman, Pieter, Rahman, Farzana, Jigisha, Anupama and Cuypers, Bart, 2016, F1000Research (5), 2852, Published
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Biochemical, transcriptional, and bioinformatic analysis of lipid droplets from seeds of date palm ('Phoenix dactylifera' L.) and their use as potent sequestration agents against the toxic pollutant, 2,3,7,8-tetrachlorinated dibenzo-p-dioxin
Hanano, Abdulsamie, Almousally, Ibrahem, Shaban, Mouhnad, Rahman, Farzana, Blee, Elizabeth and Murphy, Denis J., 2016, Frontiers in Plant Science (7), Published
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Highlights of the 2nd Bioinformatics Student Symposium by ISCB RSG-UK
White, Benjamen, Fatima, Vayani, Fatima, Nazeefa, Das, Sayoni, Rahman, Farzana and Hassan, Mehedi, 2016, F1000Research (5), Published
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Highlights from the 11th ISCB Student Council Symposium 2015
Wilkins, Katie, Hassan, Mehedi, Francescatto, Margherita, Jespersen, Jakob, Parra, R. Gonzalo, Cuypers, Bart, DeBlasio, Dan, Junge, Alexander, Jigisha, Anupama and Rahman, Farzana, 2016, BMC Bioinformatics (17), Suppl 3 pp 203-205, Published
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Highlights of the 1st Student Symposium of the ISCB RSG UK [version 1; peer review: not peer reviewed]
Vayani, Fatima, Hassan, Mehedi, Rahman, Farzana, Farmer, Rohit and Das, Sayoni, 2015, F1000Research (4), 154, Published
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benchNGS: an approach to benchmark short reads alignment tools
Rahman, Farzana, Hassan, Mehedi, Kryshchenko, Alona, Dubchak, Inna, Tatarinova, Tatiana V. and Alexandrov, Nickolai, 2015, arXiv, Published
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Highlights from the Tenth International Society for Computational Biology (ISCB) Student Council Symposium 2014
Rahman, Farzana, Wilkins, Katie, Jacobsen, Annika, Junge, Alexander, Vicedo, Esmeralda, DeBlasio, Dan, Jigisha, Anupama and Di Domenico, Tomás, 2015, BMC Bioinformatics (16), Suppl 2, Published
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Bioinformatic analysis of fruit-specific expressed sequence tag libraries of 'Diospyros kaki' Thunb.: view at the transcriptome at different developmental stages
Harikrishna, Jennifer Ann, Luo, Zhengrong, Sablok, Gaurav, Luo, Chun, Lee, Wan Sin, Rahman, Farzana and Tatarinova, Tatiana V., 2011, 3 Biotech (1), 1 pp 35-45, Published
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